PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2506
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 300aa    MW: 34042.3 Da    PI: 9.5335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2506genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-1369119355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  + h e+Er+RR+++ s ++ Lr+llP       ++K s ++   +Av+YIk+L+
  Gh_D12G2506  69 KLHREIERQRRQDMASLYASLRSLLPGeY---IKGKRSMSDHMNEAVNYIKHLE 119
                  67*************************77...********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.41866118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.77E-1266123No hitNo description
SuperFamilySSF474592.62E-1467137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-1169119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-1170134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-672124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MLPLHQSDDL VYQIFSHTKQ HKIPQDPITG HTVVVESNPI ISNPTVKNRG RKICHMEGGA  60
GSDKYKKQKL HREIERQRRQ DMASLYASLR SLLPGEYIKG KRSMSDHMNE AVNYIKHLEK  120
KVKDLDAKRH ELKRVYDLAS VGSRTKPAAA SISHHCFIIR PCLIGIEIMF RCGVEDQDLS  180
LSRVLAVLVD EGLHVVSCFS TKSEEFLFHT IQTEVNDPTS VNISRLQQKL PQSSEHCTAS  240
SLRPKMKVPK VATWLVRSIN YVYAGVYIYF ISNLNNGVMC GAASQANELN THLLYIRTYI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5812192e-47JX581219.1 Gossypium hirsutum clone NBRI_GE13802 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016718252.11e-180PREDICTED: transcription factor bHLH118
TrEMBLA0A0D2RNY10.0A0A0D2RNY1_GOSRA; Uncharacterized protein
STRINGGorai.008G282400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-40bHLH family protein