PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G2505

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 205aa MW: 22685.6 Da PI: 5.5526

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G2505	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.8	3.4e-07	60	90	1	34
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...T CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskap 34 ++ +h +Er+RR+++ + ++ Lr llP + Gh_D12G2505 60 KKLMHRDVERQRRQEMATLYASLRNLLPLE---Y 90 5789************************96...3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.71E-11	56	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.53E-8	58	109	No hit	No description
PROSITE profile	PS50888	9.146	59	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-7	60	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-4	60	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MDELFLFQFP SIPNPQNETP QYKVLDYVVP VDGSGNTHLY SSMGSGAAGN DDDDDNGEKK 60 KLMHRDVERQ RRQEMATLYA SLRNLLPLEY QDHMNGTVMY IKYLQKRVSE LSYKRDELKK 120 VLNSSGFDHG MSSDGAVLST AVVHQSLDGG VEVVISTGFG ARALTLSRVL GLLVQEGLDV 180 VSCVSTRIHG GLAHTIQSEL VIFSY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX618280	1e-132	JX618280.1 Gossypium hirsutum clone NBRI_GE63693 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435765.1	1e-128	PREDICTED: transcription factor bHLH120-like isoform X1
Refseq	XP_012435766.1	1e-128	PREDICTED: transcription factor bHLH126-like isoform X2
Swissprot	Q9STJ6	5e-30	BH126_ARATH; Transcription factor bHLH126
TrEMBL	A0A0D2Q3D9	1e-126	A0A0D2Q3D9_GOSRA; Uncharacterized protein
STRING	Gorai.008G282300.1	1e-127	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	7e-31	bHLH family protein