PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G2494 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 207aa MW: 23352.2 Da PI: 9.5849 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 7.1e-17 | 45 | 95 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ g+Wv+e+r+p +k+ r++lg+f a++Aa+a++ a+ +l+g Gh_D12G2494 45 PVYRGVRRRN-PGKWVSEVREP---NKKSRIWLGTFPKADMAARAHDVAAIALRG 95 68*****887.9******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-11 | 45 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-30 | 46 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-29 | 46 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.614 | 46 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-20 | 46 | 105 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-7 | 47 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.20E-28 | 47 | 105 | No hit | No description |
PRINTS | PR00367 | 1.1E-7 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MVDSGSVSES GTDRPVNFSD DYMMLASSYP KRRAGRKKFR ETRHPVYRGV RRRNPGKWVS 60 EVREPNKKSR IWLGTFPKAD MAARAHDVAA IALRGKSACL NFADSAWKLP VPASSDPKDI 120 QKTVAEVAET FRTAEHSSGN SRNDAKRSEN TEMQKGFYLD EEALFGTQRF WANMAAGMMM 180 SPPRSGHDGG WEEHEVDDYV PLWSYSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 44 | 102 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.8116 | 0.0 | boll| leaf| ovule| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37993863 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY422828 | 0.0 | AY422828.2 Gossypium hirsutum putative dehydration responsive element binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012440211.1 | 1e-149 | PREDICTED: dehydration-responsive element-binding protein 1D isoform X1 | ||||
Refseq | XP_012440212.1 | 1e-149 | PREDICTED: dehydration-responsive element-binding protein 1D isoform X2 | ||||
Swissprot | Q9FJ93 | 2e-68 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | Q6TF25 | 1e-151 | Q6TF25_GOSHI; Putative dehydration responsive element binding protein | ||||
STRING | Gorai.008G280600.1 | 1e-149 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM355 | 28 | 187 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 3e-60 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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