PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G2429

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 397aa MW: 42713.6 Da PI: 5.5357

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G2429	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96	2.6e-30	189	248	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ d ++++itY+geH+h+k Gh_D12G2429 189 SDPWAWRKYGQKPIKGSPYPRNYYRCSSSkGCSARKQVERSNLDSDIFIITYTGEHTHPK 248 699**********************998**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.5E-30	174	249	IPR003657	WRKY domain
PROSITE profile	PS50811	32.237	183	249	IPR003657	WRKY domain
SuperFamily	SSF118290	5.1E-26	184	249	IPR003657	WRKY domain
SMART	SM00774	9.7E-37	188	248	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	190	247	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MAEDWDLYAV VRSCTSVANT TRAVENNNNN ENCSSSFEDP LACLASLTFE EDDDPFPFPN 60 LSQLAETGHL QDSYKPFLPN ADPIAAAAAI DPCSSSSHHG GSSSQLHQHQ RLQHQQEQPA 120 ATGIGSPLTP TSAPLFTFAG FGNQQQVQPQ SHQQQQTRAQ PPVQTPRSRK RKNQQKRTVC 180 HVTADKLSSD PWAWRKYGQK PIKGSPYPRN YYRCSSSKGC SARKQVERSN LDSDIFIITY 240 TGEHTHPKPT HRNSLAGSTR NKLSSVQKPT TTKDSAAETI PTTSTVSCSS PRYATSLSPI 300 SPTTTLSAPE DTAAAVHKTG DIGGEEESVY MDVESDEDDD DLLIPNVHVD EDLFKGLEEL 360 VGSGSNGVGI VPTFGDNFSS WSTGNSAAAG AAASGGC

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MAEDWDLYAV VRSCTSVANT TRAVENNNNN ENCSSSFEDP LACLASLTFE EDDDPFPFPN  60
LSQLAETGHL QDSYKPFLPN ADPIAAAAAI DPCSSSSHHG GSSSQLHQHQ RLQHQQEQPA  120
ATGIGSPLTP TSAPLFTFAG FGNQQQVQPQ SHQQQQTRAQ PPVQTPRSRK RKNQQKRTVC  180
HVTADKLSSD PWAWRKYGQK PIKGSPYPRN YYRCSSSKGC SARKQVERSN LDSDIFIITY  240
TGEHTHPKPT HRNSLAGSTR NKLSSVQKPT TTKDSAAETI PTTSTVSCSS PRYATSLSPI  300
SPTTTLSAPE DTAAAVHKTG DIGGEEESVY MDVESDEDDD DLLIPNVHVD EDLFKGLEEL  360
VGSGSNGVGI VPTFGDNFSS WSTGNSAAAG AAASGGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	5e-19	190	250	18	80	Disease resistance protein RRS1
5w3x_D	5e-19	190	250	18	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM438478	0.0	KM438478.1 Gossypium aridum WRKY113 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636521.1	0.0	PREDICTED: probable WRKY transcription factor 27
Swissprot	Q9FLX8	4e-60	WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBL	A0A0A7E9U1	0.0	A0A0A7E9U1_GOSAI; WRKY113
STRING	Gorai.008G273700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9998	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	3e-58	WRKY DNA-binding protein 27

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]