PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G2385

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 789aa MW: 85539 Da PI: 5.6655

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G2385	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.9	3.7e-30	90	174	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ k+plWe+vs+k++e g++rs+k+C+ek+en++k+yk++ke++ +r++++s +++f+qlea Gh_D12G2385 90 RWPRQETLALLKIRSDMDATFRDATVKGPLWEDVSRKLAELGYKRSAKKCREKFENVHKYYKRTKETRAGRQDGKS--YKFFSQLEA 174 8*******************************************************************866665..*****85 PP
2	trihelix	109.9	1.6e-34	529	614	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a Gh_D12G2385 529 RWPKTEVLALINLRSGLESRYQEAGPKGPLWEEISAGMSRLGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 614 8*******************************************************************8.99999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0048	87	149	IPR001005	SANT/Myb domain
CDD	cd12203	3.35E-28	89	154	No hit	No description
PROSITE profile	PS50090	6.667	89	147	IPR017877	Myb-like domain
Pfam	PF13837	7.4E-21	89	175	No hit	No description
SMART	SM00717	0.035	526	588	IPR001005	SANT/Myb domain
CDD	cd12203	5.86E-32	528	593	No hit	No description
Pfam	PF13837	1.5E-23	528	615	No hit	No description
PROSITE profile	PS50090	6.76	528	586	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MQQEGGGGGG GGGQQSQYGE MTTGPPTTGA VSEASEQLVE AASPISSRPP AGNLDEFMRL 60 ASVGGGDELG LGDRHGSGGG GGAGVASGNR WPRQETLALL KIRSDMDATF RDATVKGPLW 120 EDVSRKLAEL GYKRSAKKCR EKFENVHKYY KRTKETRAGR QDGKSYKFFS QLEALQTTSG 180 AAPGNVSIPV IPATVAVTAA SLDVAPVSVG IPMPISSAAR IVPPTTAVPM SSSSFLAMPG 240 SALAPVPVAV PEPATAPAPA PPAATTAAPF GISFSSNSST FSQGFDDDEE DEDEVGVGGE 300 PSSMAGTSRK RKRSSSRGGG GSSTRRMMEF FEGLMKQVMQ KQEAMQQRFL EAMEKREQDR 360 TIREEAWKRQ EMARLTREHE LMAQERAIAA SRDAAIVSFL QKITGQTIQL PTTATVIVPA 420 APPPPPPTQP TVSVVPPEVP IAPPSHQTPT LPQQKQQEQQ QTHISHHQPP PPQQQPQVVQ 480 QQQQLQHMEL VRHQQQPITT EIVMAIPEQQ VPPQETGGSG SLAEPASSRW PKTEVLALIN 540 LRSGLESRYQ EAGPKGPLWE EISAGMSRLG YKRSAKRCKE KWENINKYFK KVKESNKKRP 600 EDAKTCPYFH QLDALYRKKI LGGGTSSGSF SDHNRPDEET SRQHHDPTLS TAAPQPSQNE 660 SGATADVVTS KEGLSSHPFG EGYGGAAKKP GSTVRELMEE QREGLHHQQH HHRGQSLLVD 720 GYGRIDEPDS DIMDQEVDED DDEEDNDDDD DEELEEERKM GYKIEFQRQN SNTPNGGGNG 780 APSFFTMVQ

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MQQEGGGGGG GGGQQSQYGE MTTGPPTTGA VSEASEQLVE AASPISSRPP AGNLDEFMRL  60
ASVGGGDELG LGDRHGSGGG GGAGVASGNR WPRQETLALL KIRSDMDATF RDATVKGPLW  120
EDVSRKLAEL GYKRSAKKCR EKFENVHKYY KRTKETRAGR QDGKSYKFFS QLEALQTTSG  180
AAPGNVSIPV IPATVAVTAA SLDVAPVSVG IPMPISSAAR IVPPTTAVPM SSSSFLAMPG  240
SALAPVPVAV PEPATAPAPA PPAATTAAPF GISFSSNSST FSQGFDDDEE DEDEVGVGGE  300
PSSMAGTSRK RKRSSSRGGG GSSTRRMMEF FEGLMKQVMQ KQEAMQQRFL EAMEKREQDR  360
TIREEAWKRQ EMARLTREHE LMAQERAIAA SRDAAIVSFL QKITGQTIQL PTTATVIVPA  420
APPPPPPTQP TVSVVPPEVP IAPPSHQTPT LPQQKQQEQQ QTHISHHQPP PPQQQPQVVQ  480
QQQQLQHMEL VRHQQQPITT EIVMAIPEQQ VPPQETGGSG SLAEPASSRW PKTEVLALIN  540
LRSGLESRYQ EAGPKGPLWE EISAGMSRLG YKRSAKRCKE KWENINKYFK KVKESNKKRP  600
EDAKTCPYFH QLDALYRKKI LGGGTSSGSF SDHNRPDEET SRQHHDPTLS TAAPQPSQNE  660
SGATADVVTS KEGLSSHPFG EGYGGAAKKP GSTVRELMEE QREGLHHQQH HHRGQSLLVD  720
GYGRIDEPDS DIMDQEVDED DDEEDNDDDD DEELEEERKM GYKIEFQRQN SNTPNGGGNG  780
APSFFTMVQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3065	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016725618.1	0.0	PREDICTED: trihelix transcription factor GTL1-like isoform X1
Swissprot	Q39117	7e-71	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A1U8MJ37	0.0	A0A1U8MJ37_GOSHI; trihelix transcription factor GTL1-like isoform X1
STRING	Gorai.008G262400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6226	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	3e-56	GT-2-like 1