PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2301
Common NameWRKY60
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 355aa    MW: 39792.1 Da    PI: 5.4009
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2301genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.62.6e-28131190258
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                  dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v++s+edp+++eitY+g+H++
  Gh_D12G2301 131 DDGYSWRKYGQKDILGAKYPRSYYRCTYRhtqDCWATKQVQKSDEDPTIFEITYRGTHTC 190
                  8**************************998899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-27124190IPR003657WRKY domain
PROSITE profilePS5081121.172125188IPR003657WRKY domain
SuperFamilySSF1182901.15E-24129190IPR003657WRKY domain
SMARTSM007742.1E-38130192IPR003657WRKY domain
PfamPF031064.7E-26131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEHRGNREQG TLISELIQGM ELAKQLRVHL DTASSAESMD LLVQKILSSY EKALLILQFS  60
RPMSMGQPQQ NVGATSGVPE SPLSINGSPR SDDLDKDNQD TRDVSKKRKM LPRWTDHVRV  120
TSENLLEGTH DDGYSWRKYG QKDILGAKYP RSYYRCTYRH TQDCWATKQV QKSDEDPTIF  180
EITYRGTHTC VHGNQPVPPP ASPEKQEYKL TNLNTNNNQQ LQSQGILSNL RKGLTVNTEM  240
ATSFSFPSTS FGWLKTENHS FSPSGVLDNN NILNSFSSPF TSPATPELNY FSASQPQMNS  300
FGGMLSTQNS EPDLKELISA NTSATNSPII DLDFSLDQLE LDPNFQFDAQ GFFSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19131190968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.99530.0ovule| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697780.0KF669778.1 Gossypium hirsutum WRKY transcription factor 60 (WRKY60) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314458.10.0probable WRKY transcription factor 53
TrEMBLA0A068LD530.0A0A068LD53_GOSHI; WRKY transcription factor 60
STRINGGorai.008G253300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.18e-68WRKY family protein
Publications ? help Back to Top
  1. Dou L, et al.
    Genome-wide analysis of the WRKY gene family in cotton.
    Mol. Genet. Genomics, 2014. 289(6): p. 1103-21
    [PMID:24942461]