PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G2067

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 328aa MW: 35956.7 Da PI: 7.6571

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G2067	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.9	7.1e-08	82	106	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ Gh_D12G2067 82 FKTKLCCKFRA-GTCPYIKNCNFAHS 106 69*******.***********8 PP
2	zf-CCCH	18.7	3e-06	156	181	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ Gh_D12G2067 156 YKGRHCKKFYTEEGCPYGDNCTFLHD 181 78888********************7 PP
3	zf-CCCH	43.2	6.7e-14	225	250	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Gh_D12G2067 225 WKTRICNKWELTGYCPFGNKCHFAHG 250 8************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	5.76E-8	79	112	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.4E-14	79	114	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0035	81	107	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13	81	108	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-5	82	106	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.0E-9	153	183	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.05E-7	154	183	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.058	155	182	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.23	155	183	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.3E-17	219	254	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.02E-10	221	255	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.9E-9	224	251	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.225	224	252	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.4E-11	225	250	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MGYSRDNVVH VIPNPIDPSV WATEEDYRAW NSEETFNDTP SNFSYDQRQP QSWSNSDMPP 60 NKKSRNSQDL NSRSKAIGKM FFKTKLCCKF RAGTCPYIKN CNFAHSIEEL RRPPPNWQEI 120 VAAHEEEKGI LAEPREEFHI PSLGSNSFSG ETQRSYKGRH CKKFYTEEGC PYGDNCTFLH 180 DEQSKNRESV AISLGPGGYG GGGGGGGGAA SGGCGSGSNV KPSNWKTRIC NKWELTGYCP 240 FGNKCHFAHG VAELHRHGGA LGDTEAKDSF VAPFDSKQAG GAPLKTPADT MAASISSVPL 300 SDLGVPSQRT YCTPETRTNN SPQLERSR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243165	0.0	AC243165.1 Gossypium hirsutum clone MX179E13-jom, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439310.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 12 isoform X1
Swissprot	Q84UQ3	2e-96	C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
Swissprot	Q9LQM3	3e-96	C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBL	A0A0D2T528	0.0	A0A0D2T528_GOSRA; Uncharacterized protein
STRING	Gorai.008G225600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4003	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-99	C3H family protein