PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1906
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 337aa    MW: 37398 Da    PI: 7.7234
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1906genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.7e-08167214455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L+ l+P +     +K   Ka +L   ++Y++sLq
  Gh_D12G1906 167 SHSLAERVRRKKISERMKILQCLVPGC-----EKvTGKALMLDDIINYVQSLQ 214
                  8*************************9.....67699***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-16161229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.94E-9161218No hitNo description
PROSITE profilePS5088814.678163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-15163226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-8169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAAFSYILDP NIFLQNMAPT PKASSFMMDD GNLTSNCFSQ YYSPELFHDS LFDPNNHETS  60
CVDHCSKVVS QSDNEPSVGE KQSTGGGDST VVDKLEKGEQ VTQNVNPRNR KRKTRNGTTF  120
KTKDAKEGKA KEKKKCNNGK KGEKKSPEEP PSGYIHVRAR RGQATDSHSL AERVRRKKIS  180
ERMKILQCLV PGCEKVTGKA LMLDDIINYV QSLQNQVEFL SMKLASVSPM FYDFGVDLEA  240
LILVKPERVN SEASTTTPVL PCLQQCNPTQ ASAFVDSTTA TFAPSNNYPF LGASHQGQTP  300
ILFSHPQDNG SVLWDVEDQR QKFLNSSGLN DNLCSFH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.219623e-62boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5908641e-127JX590864.1 Gossypium hirsutum clone NBRI_GE25866 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016736493.10.0PREDICTED: transcription factor bHLH137-like
TrEMBLA0A1U8NEU70.0A0A1U8NEU7_GOSHI; transcription factor bHLH137-like
STRINGGorai.008G209900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.28e-51bHLH family protein