PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1752
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 300aa    MW: 34592.5 Da    PI: 6.7549
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1752genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.86.9e-26142191352
       RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  k +s +++s+yF++pi +AAkeL+v+lT+LK++CR++GI+RWPhRk++sl
  Gh_D12G1752 142 KLLSRKVISQYFYMPIIQAAKELNVGLTLLKKRCRELGIRRWPHRKLTSL 191
                  67899******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.461117211IPR003035RWP-RK domain
PfamPF020425.1E-21144191IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAHQCSLNGC WFKSSEMIAK EEEEHYSSPF PPRLPLDSSS TVYCNPMDWQ FPIEQGFYDE  60
VPLMSTFSTD PLYASLDIEQ TSTPTQDGYD GNGFWDELGL LFEPCNKQPM LKDEDINGEG  120
VMKKERVSSK RCKEDQRNIR AKLLSRKVIS QYFYMPIIQA AKELNVGLTL LKKRCRELGI  180
RRWPHRKLTS LRTLINNVQE LEEGEERESK VREAIEVLER ERKMLEEIPD MDLEDKTKRL  240
RQACFKANYK KRKLVPPSIM NQSPSSTGAV GSRASDLDLI TRANCRRGLS ESFSSTITMI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5804523e-92JX580452.1 Gossypium hirsutum clone NBRI_GE12885 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435574.10.0PREDICTED: protein RKD1-like
TrEMBLA0A0D2U5Z20.0A0A0D2U5Z2_GOSRA; Uncharacterized protein
STRINGGorai.008G193400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121801932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.14e-45RWP-RK domain-containing protein