PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1725
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 310aa    MW: 34998.8 Da    PI: 4.4966
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1725genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-1992145356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++t +q++ Le+ Fe ++++  +++ +LAk lgL+ rqV +WFqNrRa++k
  Gh_D12G1725  92 KKRRLTVDQVQFLEKSFEAENKLEPDRKVQLAKDLGLQSRQVAIWFQNRRARWK 145
                  56689************************************************9 PP
2HD-ZIP_I/II125.72.1e-4091183193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrl+ +qv++LE+sFe+e+kLep+rKv+la++Lglq rqva+WFqnrRAR+ktkqlEkdy++++++y++lk++ ++L ke+++L+ee+ +
  Gh_D12G1725  91 EKKRRLTVDQVQFLEKSFEAENKLEPDRKVQLAKDLGLQSRQVAIWFQNRRARWKTKQLEKDYDSMQASYNSLKADYDNLVKETDKLKEEVVQ 183
                  69**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.32987147IPR001356Homeobox domain
SMARTSM003898.4E-1890151IPR001356Homeobox domain
SuperFamilySSF466892.74E-1891157IPR009057Homeodomain-like
PfamPF000461.5E-1692145IPR001356Homeobox domain
CDDcd000865.43E-1792148No hitNo description
Gene3DG3DSA:1.10.10.607.7E-2094155IPR009057Homeodomain-like
PRINTSPR000318.9E-6118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000318.9E-6127143IPR000047Helix-turn-helix motif
PfamPF021837.1E-15147188IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAGGRVYRSN TSADAGSNNL SVLLQSRWVP SSSEPLDTLF IPGSSPSPFL VSGTRSMVSF  60
EGVDRRRSYF RTFDGEEKVE EDMEEYLHRS EKKRRLTVDQ VQFLEKSFEA ENKLEPDRKV  120
QLAKDLGLQS RQVAIWFQNR RARWKTKQLE KDYDSMQASY NSLKADYDNL VKETDKLKEE  180
VVQLTDKLLL EGKEKGEPEL PDAKTSSQEL PSEAAEGEES KVVPVVSAKS DYTEGVHSSV  240
LLEGAGSTYP FEPDQSDLSQ DEEDNLSKGL LHLPSCVFPK LQDIDYSDPP AGSCNFGFPL  300
DDHAFWSWAY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016736331.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
SwissprotQ022836e-45HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A1U8NBC10.0A0A1U8NBC1_GOSHI; homeobox-leucine zipper protein HAT5-like isoform X1
STRINGGorai.008G190300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-44homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]