PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1689

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 501aa MW: 55940.8 Da PI: 7.1798

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1689	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	152.7	2.2e-47	117	274	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasec.eaesssssas 83 +gkkdrhski+T+ g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k+aikelt++ ss+s+se+ +a+++ + Gh_D12G1689 117 TGKKDRHSKIYTAHGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKAAIKELTENlpalkhrcseggksvSSTSESEVvSAAKECQ--- 211 79************************************************************9888888877776552222222222222222... PP TCP 84 nsssg...............kaaksaa.kskksqksaasalnlakesrakarararertrekmrikn 134 + ++ ++a ++++++++ + ++ +a+esr karararertrekmr+++ Gh_D12G1689 212 ----DnmgdqqgiiasgeamRSTTTARvTKERKSRKVSFNHIVARESRDKARARARERTREKMRMRD 274 ....02333444667887885555555577777777777788888******************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.5E-47	117	272	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	37.144	119	177	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.753	252	269	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MFPSSNSYNP CPSTIHAMPG NSISADQHPA DSSLEDHPPA FFNFPAPFFD DDDDDGLLMS 60 HLLSQAQQQI LGSSSNTAPP DSEINAAPPI KETKKVPPNR KRSSSNGAKQ GIPRKRTGKK 120 DRHSKIYTAH GPRDRRMRLS LQIARKFFDL QDMLGFDKAS KTIEWLFSKS KAAIKELTEN 180 LPALKHRCSE GGKSVSSTSE SEVVSAAKEC QDNMGDQQGI IASGEAMRST TTARVTKERK 240 SRKVSFNHIV ARESRDKARA RARERTREKM RMRDLEKTNK CSDESNPNEL EELQSSSPLE 300 IGENSGPSTE TNYSLKVVTE KPHHNTADSD SIEHQMDFVS TVEKFLGITR SSSMFNYSNN 360 IADSREENSA ENCPVFSGNW GMNNERIHYS YCAMTNIKDS TGITQEQNPS IIFMTDPNEQ 420 EQKFSSSFMS NSNTQAENST TNLIANSYAK MMNHNSDLRN PSNAHEGRNP TSILMSSSHI 480 GLHSDYHENP AVSSKFHHFY L

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MFPSSNSYNP CPSTIHAMPG NSISADQHPA DSSLEDHPPA FFNFPAPFFD DDDDDGLLMS  60
HLLSQAQQQI LGSSSNTAPP DSEINAAPPI KETKKVPPNR KRSSSNGAKQ GIPRKRTGKK  120
DRHSKIYTAH GPRDRRMRLS LQIARKFFDL QDMLGFDKAS KTIEWLFSKS KAAIKELTEN  180
LPALKHRCSE GGKSVSSTSE SEVVSAAKEC QDNMGDQQGI IASGEAMRST TTARVTKERK  240
SRKVSFNHIV ARESRDKARA RARERTREKM RMRDLEKTNK CSDESNPNEL EELQSSSPLE  300
IGENSGPSTE TNYSLKVVTE KPHHNTADSD SIEHQMDFVS TVEKFLGITR SSSMFNYSNN  360
IADSREENSA ENCPVFSGNW GMNNERIHYS YCAMTNIKDS TGITQEQNPS IIFMTDPNEQ  420
EQKFSSSFMS NSNTQAENST TNLIANSYAK MMNHNSDLRN PSNAHEGRNP TSILMSSSHI  480
GLHSDYHENP AVSSKFHHFY L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016736275.1	0.0	PREDICTED: transcription factor TCP12-like
TrEMBL	A0A1U8NB89	0.0	A0A1U8NB89_GOSHI; transcription factor TCP12-like
STRING	Gorai.008G186800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11632	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	8e-32	TCP domain protein 12