PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G1645
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 92aa    MW: 10354.7 Da    PI: 10.1049
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G1645genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-0720591554
                 HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +i +  ++L++l+P++ + +  K+s + +L+++++YI+sL
  Gh_D12G1645 20 QIIDLVSKLQQLIPELRGRRPDKVSASKVLQETCNYIRSL 59
                 5667779********8677777888899**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.442559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-81973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-52059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-82076IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRSRQ SGASRITDDQ IIDLVSKLQQ LIPELRGRRP DKVSASKVLQ ETCNYIRSLH  60
REVDGLSDRL SQLLASTDTD SDQAAIIRSL LM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435728.16e-58PREDICTED: transcription factor PRE6-like
RefseqXP_016737688.16e-58PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX11e-39PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0D2U5B01e-56A0A0D2U5B0_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NI601e-56A0A1U8NI60_GOSHI; transcription factor PRE6-like
TrEMBLA0A2P5Q5P41e-56A0A2P5Q5P4_GOSBA; Uncharacterized protein
STRINGGorai.008G181800.12e-57(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.19e-39bHLH family protein