PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G1253 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 145aa MW: 16281.3 Da PI: 5.3412 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 29.1 | 2e-09 | 45 | 63 | 3 | 21 |
-SS-EEEEEEE--TT-SS- CS WRKY 3 DgynWrKYGqKevkgsefp 21 D ++WrKYGqK++kgs++p Gh_D12G1253 45 DSWSWRKYGQKPIKGSPYP 63 99***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-8 | 38 | 63 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-7 | 41 | 64 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0011 | 43 | 96 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-5 | 45 | 63 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.164 | 45 | 63 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MDGSISPKQN QSQASKRRKV VERTVVTVKM GENGGKLKND GPPYDSWSWR KYGQKPIKGS 60 PYPSFPQNQE EDPFSGNLER STVGLLLDEE PVSCCSRMKA VSSSPTPKSE ENDFFDELEE 120 LPICSAFTRF MRSKFFDEGI PVVPP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM438476 | 1e-130 | KM438476.1 Gossypium aridum WRKY105 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437960.1 | 3e-51 | PREDICTED: probable WRKY transcription factor 65 isoform X1 | ||||
Refseq | XP_012437961.1 | 7e-52 | PREDICTED: probable WRKY transcription factor 65 isoform X2 | ||||
Refseq | XP_012437962.1 | 7e-52 | PREDICTED: probable WRKY transcription factor 65 isoform X2 | ||||
Refseq | XP_012437963.1 | 7e-52 | PREDICTED: probable WRKY transcription factor 65 isoform X2 | ||||
Refseq | XP_012437964.1 | 7e-52 | PREDICTED: probable WRKY transcription factor 65 isoform X2 | ||||
TrEMBL | A0A0D2T080 | 2e-50 | A0A0D2T080_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G138900.1 | 3e-51 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15371 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 1e-09 | WRKY DNA-binding protein 65 |