PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G1018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 22314.2 Da PI: 7.0377 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125 | 3.7e-39 | 10 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+k+Cv+apyf ++q +++fa+vhk+FGasn kll+ +p ++r da+ +l+yeA ar+rdPvyG++g+i++lqqq+ +l+aela++ Gh_D12G1018 10 PCGACKFLRRKCVKGCVFAPYFDSDQgTAHFAAVHKVFGASNAAKLLQGTPVHRRVDAVFTLCYEALARVRDPVYGCAGHIFTLQQQVVNLQAELAYI 107 7***********************9989********************************************************************99 PP DUF260 98 kee 100 +++ Gh_D12G1018 108 QAR 110 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.734 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.9E-38 | 10 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSAANNGTGP CGACKFLRRK CVKGCVFAPY FDSDQGTAHF AAVHKVFGAS NAAKLLQGTP 60 VHRRVDAVFT LCYEALARVR DPVYGCAGHI FTLQQQVVNL QAELAYIQAR LSTLQCLSLV 120 LPQSQAECRS PTTFHSASEL GSDLVCSSDT SMNVFDLPQP QQTSIELAGS PNPFNRVTED 180 EDLQALAWEF VSQCHPGVRF RPSTSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-36 | 10 | 119 | 11 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-36 | 10 | 119 | 11 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615442 | 5e-53 | JX615442.1 Gossypium hirsutum clone NBRI_GE59429 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016735177.1 | 1e-152 | PREDICTED: LOB domain-containing protein 19-like | ||||
Swissprot | O81322 | 1e-64 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A1U8N7T6 | 1e-151 | A0A1U8N7T6_GOSHI; LOB domain-containing protein 19-like | ||||
STRING | Gorai.008G114300.1 | 1e-151 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 6e-67 | LOB domain-containing protein 31 |