PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G0780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 322aa MW: 36312.3 Da PI: 4.5958 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.2 | 6.8e-19 | 58 | 111 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Gh_D12G0780 58 KKRRLSVDQVKALEKNFEVENKLEPERKVRLAQELGLQPRQVAVWFQNRRARWK 111 566899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 126.6 | 1.1e-40 | 57 | 149 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy Lk++y++lk + ++L++ +e+L +e++e Gh_D12G0780 57 EKKRRLSVDQVKALEKNFEVENKLEPERKVRLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKTSYETLKLNFDTLQHGNEALLKEIRE 149 69*************************************************************************************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.04E-19 | 49 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 53 | 113 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-17 | 56 | 117 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.9E-16 | 58 | 111 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.00E-16 | 58 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 60 | 119 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.4E-5 | 84 | 93 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 88 | 111 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.4E-5 | 93 | 109 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-15 | 113 | 154 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MKRSLGCSDS MAVFMSICPT TDEESPRNNH IYSKELQSML DGLEEEGCLE EAGHVAEKKR 60 RLSVDQVKAL EKNFEVENKL EPERKVRLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG 120 LLKTSYETLK LNFDTLQHGN EALLKEIREL KAKLNGESVG SNLSVKEEAI LPKTMEQSEP 180 LPASSLTTSS EPVELNYECF NSSNNRVADA ILFPELKDGS SDSDSSAILN EDDHTNTNNG 240 VVSSSGVLQS QHLLMSPTTT SSFNFDSSSS SSPSSMNCFQ FSKTTYLVKM EEHNFFTADE 300 ACNFFSDEQA PSLQWCYPEQ WN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 113 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2677 | 1e-117 | boll| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016715392.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
TrEMBL | A0A1U8LLD7 | 0.0 | A0A1U8LLD7_GOSHI; homeobox-leucine zipper protein ATHB-6-like | ||||
STRING | Gorai.008G091100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 2e-68 | homeobox protein 16 |