PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G0398 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 171aa MW: 19271.5 Da PI: 4.6237 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 73 | 4.5e-23 | 38 | 92 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 +Y eC++N a +G + vDGC fm+ + +e t++al Ca CgCHR+FHR+ + Gh_D12G0398 38 ETYMECRRNYLAPIGRYIVDGCEKFMKRSASEdQTKEALFCAGCGCHRSFHRKVM 92 68*************************98888799******************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 7.3E-19 | 39 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.1E-21 | 39 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 19.054 | 40 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-10 | 40 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MEKSIKTDEI NKAAVVVEVE ANSVQGMDGD GVDEQGGETY MECRRNYLAP IGRYIVDGCE 60 KFMKRSASED QTKEALFCAG CGCHRSFHRK VMPPQPHVQD NTRFHRIMDF LYSLPLTRLE 120 PRPPAPWLMR SLQQQQLSNY ELVEGQGSSL SPEEGEEKTD SESGDEVNQA V |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016699872.1 | 1e-127 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
Refseq | XP_016729864.1 | 1e-127 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
TrEMBL | A0A1U8MWB0 | 1e-126 | A0A1U8MWB0_GOSHI; zinc-finger homeodomain protein 2-like | ||||
STRING | Gorai.008G044800.1 | 1e-125 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22076 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74660.1 | 2e-15 | mini zinc finger 1 |