PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G0397 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 232aa MW: 26259.1 Da PI: 8.8179 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 69.6 | 5.3e-22 | 67 | 115 | 3 | 56 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 +rYkeC++NhAas+G +a+DGCg f+ + + + CaACgCHR+FHR++ Gh_D12G0397 67 ICRYKECRRNHAASIGRYAIDGCGGFICC-----KDDLFMCAACGCHRSFHRKD 115 589*************************8.....34689*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-10 | 58 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.6E-17 | 68 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.5E-17 | 69 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 21.215 | 70 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-21 | 161 | 229 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.32E-14 | 162 | 229 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.665 | 166 | 230 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 1.9E-20 | 170 | 224 | IPR006455 | Homeodomain, ZF-HD class |
CDD | cd00086 | 0.00709 | 171 | 229 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MQFFPFKEQF HLPNHPTNTA LLIINSLSLM EGETSNVVIK VEAESDVEPI SVQRCCSLVS 60 DQSNERICRY KECRRNHAAS IGRYAIDGCG GFICCKDDLF MCAACGCHRS FHRKDYLPPP 120 PQPKLMPSCL APLPLASHNG LTGETSLFVK DRNNTVAGPG AEEQNTNKEA KRTRLTVEQK 180 NKMMRFADKL GWRSQGHDDA EIRQFCEQVG ITKRVFVVWL NNNRRRSRKG SK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-15 | 172 | 224 | 21 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX588026 | 1e-148 | JX588026.1 Gossypium hirsutum clone NBRI_GE22331 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016699874.1 | 1e-174 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
TrEMBL | A0A1U8KGP1 | 1e-173 | A0A1U8KGP1_GOSHI; zinc-finger homeodomain protein 2-like | ||||
STRING | Gorai.008G044700.1 | 1e-172 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18668 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60480.1 | 6e-31 | homeobox protein 26 |