PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G3523
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 412aa    MW: 46994.3 Da    PI: 6.7036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G3523genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.6e-14226277155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Gh_D11G3523 226 QRMTHIAVERNRRRQMNDYLNSLRSLMPPC---YIQRGDQASIIAGAIDFVKELE 277
                  79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.15E-12224281No hitNo description
PROSITE profilePS5088816.126225276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-17225292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-11226277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-15226289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11231282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MLVTERGTQK EKKKEFRAFT STTAKLFMER PQGPINPYFL GEHLEVECLE QGFISCERLK  60
LGEEEEEAHF SIPSFEEKMP FLQMLQSVES PQLFAFKEPN FQTLLRLQHM KKPWELNTNP  120
FIPEMETQVQ ALELESCVTH ETVLDLHSPV KSETKELKKS PPSSSCVEVL SSGSNQHQPK  180
SDNCSREPNL GSSPQKIFTK SPPITRERRK RKRTKAAKNK EEVESQRMTH IAVERNRRRQ  240
MNDYLNSLRS LMPPCYIQRG DQASIIAGAI DFVKELEQLL QSLEAQKRTR KVEESNNSMS  300
NPAMEIHQQE YENGSEDGHC GEEVKAESKT GAAEVEVNVT HNHVNLKIQC SRRAGQLIQA  360
IVTLETLRLT ILHLNITTSR ASVLYSFNLK MEDDSALRSA DEIAAAVHQI FS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212RRKRKR
2226237RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016695864.10.0PREDICTED: transcription factor bHLH67-like isoform X1
TrEMBLA0A1U8K5G50.0A0A1U8K5G5_GOSHI; transcription factor bHLH67-like isoform X1
STRINGGorai.007G113200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.18e-60bHLH family protein