PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G3168 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 236aa MW: 26061.6 Da PI: 6.6786 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.1 | 7.3e-12 | 62 | 96 | 1 | 35 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 +g+WT+eEd +lvd+++++G Wk++++ g++R Gh_D11G3168 62 KGPWTPEEDRILVDYIQKHGHSKWKSVPALAGLNR 96 79****************************99766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.86E-9 | 57 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.76 | 57 | 105 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 60 | 95 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-4 | 61 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-9 | 62 | 96 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.22E-6 | 64 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MPINIITILT INTKRTYTHI HYIKKPPTFS QFQHLNYIPS LFSSPIIQFK GMKGNDKNGL 60 KKGPWTPEED RILVDYIQKH GHSKWKSVPA LAGLNRLHQL LAAASFSNLI NNPLDIVNAL 120 MLQSDAVATL AKSLHLSHNM LQALASTPTT MASQDPTKAC STSNEYQFGS SSSSLPVNVP 180 NLDTTPQPIP PMAPRPTIVD DHHETNNITN PSSTTLQEWD DFMDGGEASE DLEVPL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012434998.1 | 8e-90 | PREDICTED: transcription repressor MYB6-like isoform X1 | ||||
TrEMBL | A0A0D2PJS5 | 1e-88 | A0A0D2PJS5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G362200.1 | 2e-89 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10280.1 | 2e-16 | myb domain protein 92 |