PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G2701 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 314aa MW: 34749.8 Da PI: 6.6337 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.5e-13 | 113 | 164 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Gh_D11G2701 113 QRMTHIAVERNRRRQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 164 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.24E-11 | 111 | 165 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.8E-14 | 111 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-16 | 112 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.459 | 112 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-10 | 113 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-9 | 118 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MALEAVVFQQ DLFGYNSKDL YSLLGGNLSY EDIHFPHHNQ TSDEANNNFV NGGDSYWVSS 60 SSSPTSMAPP PPPDEATNNN VNGSSSSALD TSTSRPKRRR LKTRKNKEEI ENQRMTHIAV 120 ERNRRRQMNE YLSVLRSLMP ESYVQRGDQA SIIGGAINFV KELEHCVQLL SAKKETKERP 180 NGSSSGCSSP FGEFFTFPQY STSSTRGDNN SIPMNESMVG TRSAIADIEV TMVESHANLK 240 IRSKKGPAQL LKLVSGLNSM RLNILHLNVT TVDQTVLYSL SVKVEDDCKL TSVDDIATAV 300 NQLLGRIQEE AVLN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 100 | KRRRL |
2 | 113 | 124 | RMTHIAVERNRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.14366 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016728140.1 | 0.0 | PREDICTED: transcription factor bHLH94-like isoform X1 | ||||
Swissprot | Q9SK91 | 2e-83 | BH094_ARATH; Transcription factor bHLH94 | ||||
TrEMBL | A0A1U8MMV0 | 0.0 | A0A1U8MMV0_GOSHI; transcription factor bHLH94-like isoform X1 | ||||
TrEMBL | A0A2P5RFY1 | 0.0 | A0A2P5RFY1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G294800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1116 | 27 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 1e-82 | bHLH family protein |
Publications ? help Back to Top | |||
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