PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G2566

Common Name

WRKY54

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 324aa MW: 36608.2 Da PI: 10.5094

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G2566	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.8	8.4e-32	257	314	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ Gh_D11G2566 257 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCLEDPSMLIVTYEGEHNHS 314 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.6E-17	208	253	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.2E-34	243	314	IPR003657	WRKY domain
PROSITE profile	PS50811	30.194	250	316	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-27	253	314	IPR003657	WRKY domain
SMART	SM00774	1.1E-38	255	315	IPR003657	WRKY domain
Pfam	PF03106	2.6E-27	257	313	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MFLSMEKVEE ANKAAIESSN RVLSLLSLPK DQLQYSNLMM KTSEAVFKFK KVVSLLNNDL 60 THSRVRKSKM FRSISPQKIF LESPNCRTIL SPKPLQVYPS NLFQKPPLEV KPSQNFSFVH 120 QQQQQQQMQQ RLQFQQQQMK YHADMVFGKS NSGINLKFDG SSCTPTMSSA GSFVSSLSLD 180 GSVANLDGNS FHLIGMPHLF GHISQHSRKR CSGKGQDGSM KCGTSGKCHC PKRRKLRIKR 240 SIKVPAISNK VADIPPDEYS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERCLEDP 300 SMLIVTYEGE HNHSRLLSTH PAHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	253	314	12	72	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031114	0.0	KF031114.1 Gossypium hirsutum WRKY transcription factor 100 (WRKY100) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001314195.1	0.0	probable WRKY transcription factor 74
Swissprot	Q93WU6	1e-114	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A1U8LIB8	0.0	A0A1U8LIB8_GOSHI; probable WRKY transcription factor 74
STRING	Gorai.007G278400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	1e-99	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Dou L, et al. Genome-wide analysis of the WRKY gene family in cotton. Mol. Genet. Genomics, 2014. 289(6): p. 1103-21 [PMID:24942461]