PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G2556

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 327aa MW: 34125.6 Da PI: 6.0913

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G2556	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.3	3.6e-10	177	221	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K + a++L + v+Y+k L Gh_D11G2556 177 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 221 99*********************8.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.55E-16	170	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.526	172	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-16	174	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.87E-11	176	226	No hit	No description
Pfam	PF00010	1.2E-7	177	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-12	178	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MAGNQQQEAG LGDDFFEQIL AVPPGYGGGG GGGATLPMGL QLGSSGGATG ASGGDSGGGG 60 FRGIGMMPLG LNLEHGFLRH EDGVVVDNNN NNASCSAASA VSGISERDSM HMVSLFPPFG 120 QMQTQQIRAS PPPPQPPPQL HQPFHSQPTS GPVAAAPHPP AVRPRVRARR GQATDPHSIA 180 ERLRRERIAE RMKALQELVP SCNKTDRAAM LDEIVDYVKF LRLQVKVLSM SRLGAAGAVA 240 QLVADVPLLS VEGDGAGGGT QPAWEKWSND GTEQQVAKLM EEDIGAAMQF LQSKALCIVP 300 ISLASAIFPA HQPDAPTIVK PESNTPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	186	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.24595	0.0	ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ525196	1e-100	HQ525196.1 Gossypium herbaceum clone NBRI_D2_1401 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016713272.1	0.0	PREDICTED: transcription factor UNE12-like
Swissprot	O22768	2e-84	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A1U8LF71	0.0	A0A1U8LF71_GOSHI; transcription factor UNE12-like
STRING	Gorai.007G277200.1	1e-170	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1611	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	2e-59	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]