PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G2383
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 80aa    MW: 9176.61 Da    PI: 8.9538
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G2383genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.0001120561354
                 HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 R+ i +++  L+e +P+ +      K + a++L + v+Y+k L
  Gh_D11G2383 20 RETIAERIRALQERVPSvN------KTDRAAMLDEIVDYVKFL 56
                 78899************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.423756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-102061IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-92064IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.59E-62061No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MVATATNYAE LNPSIFSLGR ETIAERIRAL QERVPSVNKT DRAAMLDEIV DYVKFLRLQV  60
KVSSTLLPVF SHISFSYFYF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.90723e-34boll| ovule
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013739372.17e-20transcription factor UNE12-like
RefseqXP_021898025.11e-19transcription factor UNE12 isoform X2
SwissprotQ9ZUG94e-16BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0D2SR899e-50A0A0D2SR89_GOSRA; Uncharacterized protein
STRINGGorai.007G257400.12e-50(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3701622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-18LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]