PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G2061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 360aa MW: 40344.1 Da PI: 6.51 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl Gh_D11G2061 14 KGPWSPEEDAKLKAYIEENGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.6 | 1.2e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Gh_D11G2061 69 GAFSEEEDNIICSLYINIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 79*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.234 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.01E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.84E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.609 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.57E-8 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE ENGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGA FSEEEDNIIC SLYINIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEQQARRA SWLTVKQEMK REGGDYMLPG MVSQPPYWPQ QLPVIPFTTT TNQDPPLPND 180 QESIKNLLIK LGGRFSDDHH PQSSTSTPIP NSMNSSRYPL DVSFAQDQLY ENSMNNTVSP 240 ASSISPINST CSQVTNGTHF NTNEVAVPND MFQGLDGFTD ELRELTYSNN QQIMNWLEGF 300 YGTDNTVDGS STTGSSSVES SSWGPIYSLG FPQLVTGFEP CQQNMPQAST YGEQYCTWAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16461581}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00089 | SELEX | Transfer from AT3G49690 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM052720 | 0.0 | KM052720.1 Gossypium hirsutum RAX-like transcription factor RAX1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314009.1 | 0.0 | transcription factor RAX3-like | ||||
Swissprot | Q9M2Y9 | 3e-84 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A1U8K4E2 | 0.0 | A0A1U8K4E2_GOSHI; transcription factor RAX3-like | ||||
STRING | Gorai.007G227500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2941 | 25 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 2e-76 | myb domain protein 84 |
Publications ? help Back to Top | |||
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