PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D11G1963 | ||||||||
Common Name | WRKY97 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 345aa MW: 37861.6 Da PI: 9.5897 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.4 | 1.1e-31 | 274 | 331 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh+ Gh_D11G1963 274 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHNHS 331 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 6.6E-17 | 224 | 270 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 4.5E-33 | 260 | 331 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.963 | 267 | 333 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-27 | 269 | 331 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-38 | 272 | 332 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-27 | 274 | 330 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MAVELMMSCR NGDSFAAKME ENAVKEAASG LESVEKLIRL LSQTQQQQQS NSNNQEKYQA 60 SSISTTSNSL DLEMDCKAEA DAAVSRFKRV ISLLDRTRTG HARFRRAPVQ PNQEQETKVY 120 YATPIQQIPP PVTTAYPLPP PPPPPPPHHH HDFMTVKTGG LERIDSSKTI NFSYSSAGNS 180 FMSSLTGDTD SKQPCSSSSA FQITNFSQVS SAGKPPLSSS SSFKRKCSSD NLGSGKCTSG 240 SSGRCHCSKK RKLRSKRVVR VPAISLKMAD IPPDDYSWRK YGQKPIKGSP HPRGYYKCSS 300 VRGCPARKHV ERALDDPSML VVTYEGEHNH SLSVAETTNL ILESS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-21 | 269 | 332 | 14 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 2e-21 | 269 | 332 | 14 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00275 | DAP | Transfer from AT2G23320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF031113 | 0.0 | KF031113.1 Gossypium hirsutum WRKY transcription factor 97 (WRKY97) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314008.1 | 0.0 | probable WRKY transcription factor 15 | ||||
Swissprot | O22176 | 2e-93 | WRK15_ARATH; Probable WRKY transcription factor 15 | ||||
TrEMBL | A0A059Q8M1 | 0.0 | A0A059Q8M1_GOSHI; WRKY transcription factor 97 | ||||
STRING | Gorai.007G216700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1715 | 28 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 9e-76 | WRKY DNA-binding protein 15 |
Publications ? help Back to Top | |||
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