PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1773
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 304aa    MW: 33809.5 Da    PI: 5.1296
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1773genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-084089154
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 r++ +  rE+ RRd++N+ f eL   l ++     +K++K++iL  +++ +k+L
  Gh_D11G1773 40 RKVQKADREKLRRDKLNEQFVELGNTLDPD----RPKNDKVTILVDTTQMLKDL 89
                 5677889********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.3413989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-1140112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-54093No hitNo description
SuperFamilySSF474591.57E-1140107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-64089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-44595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDHQWKPNDF SKPAAADLDP SNPEPRQRQE MEANDPIAAR KVQKADREKL RRDKLNEQFV  60
ELGNTLDPDR PKNDKVTILV DTTQMLKDLT VEVNRLRAEC SSLTEESREL SQEKNELREE  120
KASLKADIEN LNIQYQQRLS VMFPWTGIES SVVVAPPYSY PAPLHVPTGP IAMHPSLQPY  180
PYFLNHGPGA VANPCSTYIP YSMEQPSSQP TSSSHLSFQR DCRSKPMDDQ GGSNRDSCDG  240
SNDVVTELEL KIPGSSTNQG LSAGETKGKQ TEERSMVNGI SSSRSQGPHD SASKNLDEVS  300
KSNK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016696640.10.0PREDICTED: transcription factor bHLH121-like
SwissprotQ9LT233e-67BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A1U8K2920.0A0A1U8K292_GOSHI; transcription factor bHLH121-like
STRINGGorai.007G194400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-68bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]