PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D11G1141 | ||||||||
Common Name | WRKY31 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 268aa MW: 30016.3 Da PI: 4.908 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.3 | 2.1e-30 | 54 | 112 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+ Gh_D11G1141 54 SDLWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCKTDASMLIITYTSSHNHP 112 699***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-31 | 48 | 114 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.974 | 48 | 114 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.85E-26 | 51 | 114 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.1E-36 | 53 | 113 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-25 | 55 | 112 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 268 aa Download sequence Send to blast |
MDDSVSPKLA SDDSELNPTD TQASKRSRKV VEKIVVTVKV GENGGKLKSE GPPSDLWSWR 60 KYGQKPIKGS PYPRGYYRCS TSKGCSAKKQ VERCKTDASM LIITYTSSHN HPGPDLHCAD 120 LKQSPKEPQT THSDDDKPPT TTLKQLPEVS EKEPEEVKKE QNKTSSTDED ASEEQHFHYL 180 QSPLSFPQNN IISQEDPFNG NLEKTHDTLG FLLDEEPLSC LHITTSSIPK SEENDFFDEL 240 EELPISSAFT SLMMRSKFWD EGIPVVPS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-22 | 54 | 114 | 17 | 79 | Disease resistance protein RRS1 |
5w3x_D | 2e-22 | 54 | 114 | 17 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.6771 | 0.0 | boll| leaf| ovule |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 31072954 | 0.0 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ825873 | 0.0 | KJ825873.1 Gossypium hirsutum WRKY protein 31 (WRKY31) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313997.1 | 0.0 | probable WRKY transcription factor 35 | ||||
Refseq | XP_016695917.1 | 0.0 | PREDICTED: probable WRKY transcription factor 35 isoform X2 | ||||
Refseq | XP_016695919.1 | 0.0 | PREDICTED: probable WRKY transcription factor 35 isoform X2 | ||||
Refseq | XP_017628381.1 | 0.0 | PREDICTED: probable WRKY transcription factor 35 isoform X1 | ||||
TrEMBL | A0A0U1ZED4 | 0.0 | A0A0U1ZED4_GOSHI; WRKY protein 31 | ||||
STRING | Gorai.007G122300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15371 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01250.1 | 2e-34 | WRKY family protein |