PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G1132
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 293aa    MW: 33557.2 Da    PI: 5.9952
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G1132genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.5e-192370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  l  +v+ +G g+W+++ar  g++Rt+k+c++rw++y+
      Gh_D11G1132 23 KGPWTEEEDSMLRAYVNIHGEGRWNAVARLSGLRRTGKSCRLRWLNYM 70
                     79********************************************97 PP
2Myb_DNA-binding50.35.6e-1676119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ + eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
      Gh_D11G1132  76 RGNISLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119
                      78899*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.6981874IPR017930Myb domain
SuperFamilySSF466897.11E-3120117IPR009057Homeodomain-like
SMARTSM007171.6E-162272IPR001005SANT/Myb domain
PfamPF002499.1E-172369IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-232477IPR009057Homeodomain-like
CDDcd001671.44E-112570No hitNo description
SMARTSM007171.2E-1475123IPR001005SANT/Myb domain
PROSITE profilePS5129419.47975125IPR017930Myb domain
PfamPF002499.5E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2278124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDVYKRGFIS ETSRSEEEME LRKGPWTEEE DSMLRAYVNI HGEGRWNAVA RLSGLRRTGK  60
SCRLRWLNYM RPEIKRGNIS LEEQLLILEL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTR  120
VQKQAKQLNC DVNSKQFKDA MRYVWIPRLV ERIRASSESP SSQPSTTTNT TYNDRISNIS  180
SSQMSYANAS GSVQVDPSLL PELSGTSSDS LDTQVSSVSD LTDCYNPQSL SNYLHKGLGL  240
EKEGAATWGR DEEFQATEEH SNGWLVGGGE SSMDTVWNEE NVWFLQQQLH DGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-262012524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO29213370.0
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0341330.0AF034133.1 Gossypium hirsutum MYB-like DNA-binding domain protein (MYB5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313996.20.0transcription factor MYB108-like
RefseqXP_012490294.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ2QZJ82e-80JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A0D2SIH20.0A0A0D2SIH2_GOSRA; Uncharacterized protein
TrEMBLQ94JN50.0Q94JN5_GOSHI; Myb-like transcription factor Myb 5
STRINGGorai.007G121000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.19e-78myb domain protein 78
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]