PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0829
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 459aa    MW: 51239.2 Da    PI: 7.4885
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0829genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001785102219
                  EETTTTEEESSHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                  +C++Cgk F ++ ++  H
  Gh_D11G0829  85 VCENCGKEFFSWKSFLEH 102
                  6*************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.82E-51335No hitNo description
SMARTSM003550.171335IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5771335IPR007087Zinc finger, C2H2
PfamPF139122.0E-51535IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576671.82E-579103No hitNo description
SMARTSM0035528084104IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.08E-5223246No hitNo description
PfamPF139121.3E-9224248IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076224251IPR007087Zinc finger, C2H2
SMARTSM003550.13224246IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226246IPR007087Zinc finger, C2H2
SuperFamilySSF576671.08E-5290317No hitNo description
PfamPF139122.4E-13294318IPR007087Zinc finger, C2H2
SMARTSM003550.44295317IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369295317IPR007087Zinc finger, C2H2
PROSITE patternPS000280297317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAFIVDQQSE FKYFCKICNK RFGCGRALGG HMRAHGIGDE SRFIDDDDLA SDWEDKLLEG  60
NVVPPNNERM YRLRTNPNRL KSCRVCENCG KEFFSWKSFL EHGKCSSRPG DIAESLVSSQ  120
GSEGDDDGIT RRGSSGYFSK RKRSLRSEVG NFNAFSSPSS EEEDLANCLM MLSNATVVPL  180
VTEPEESCTS ASKEEERRNT MNFITHPAIA CRPRVPTDKA KGLFECKACK KVFNSHQALG  240
GHRASHKKVK GCFAARVDDS LADEDHHGFF LKKPTSTFRF DDTLASTSKK KSKVHECSIC  300
HRVFSSGQAL GGHKRCHWIT SNSPVETSSL GKFHQLQHQV EQIQQTQRPN FVDDSEPLDL  360
NLPAPVDELV RRNHIHPSSF DVSTKIYLQP CSGIDATEKE DNQNHLQVDN TNNNCSNSKQ  420
NEEDKAKSKV KLAKLSELKD INMSGGSSPW LQVGIGSDP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694721.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1U8JWR90.0A0A1U8JWR9_GOSHI; zinc finger protein ZAT9-like
STRINGGorai.007G088600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13535616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.19e-33C2H2-like zinc finger protein