PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0813
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 244aa    MW: 27120.8 Da    PI: 5.626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0813genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1874123255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Gh_D11G0813  74 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYHTAEMAARAHDVAALAIKG 123
                  69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-2174132IPR016177DNA-binding domain
PfamPF008474.0E-1274123IPR001471AP2/ERF domain
SMARTSM003803.3E-3674137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-3274132IPR001471AP2/ERF domain
PROSITE profilePS5103223.16974131IPR001471AP2/ERF domain
CDDcd000181.39E-3175131No hitNo description
PRINTSPR003672.3E-107586IPR001471AP2/ERF domain
PRINTSPR003672.3E-1097113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MERDHTNIEN DAHHNMLISS SSVTSTTATA SPSSMIYSFS DSDHQNERSC SKNSDNEKKK  60
RQSSDIGEGK KHPTYRGVRM RSWGKWVSEI REPRKKSRIW LGTYHTAEMA ARAHDVAALA  120
IKGRSAYLNF PQLAKLLPRP ASTSPKDVQA AASLAAASTF LDTRRCNIEA EAEASKEDEV  180
PPSNLSQASS SPSIDDDDTL FDLPDLMIDV TDRSDGFGSY SSTWQICAVD AGFRIEEPFS  240
WDYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1867132773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.161660.0ovule| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098266970.0
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708912.10.0PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ71e-66ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1U8L2Q01e-180A0A1U8L2Q0_GOSHI; ethylene-responsive transcription factor ERF038-like
STRINGGorai.007G087100.11e-155(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.11e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]