PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D11G0694
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 253aa    MW: 29197.9 Da    PI: 7.7368
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D11G0694genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.8e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + v   G  +W+++++  g+ R++k+c++rw +yl
      Gh_D11G0694 14 RGPWTIEEDHKLTNFVLNNGIICWRKVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding55.61.2e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T  E+ ++++++ +lG++ W++Ia++++ gRt++++k++w++
      Gh_D11G0694  67 RGSFTDSEEHQIIQLHSRLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-20564IPR009057Homeodomain-like
PROSITE profilePS5129413.936961IPR017930Myb domain
SuperFamilySSF466891.72E-2711108IPR009057Homeodomain-like
SMARTSM007176.4E-81363IPR001005SANT/Myb domain
PfamPF002491.5E-111461IPR001005SANT/Myb domain
CDDcd001672.24E-51661No hitNo description
PROSITE profilePS5129426.36462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-2665117IPR009057Homeodomain-like
SMARTSM007171.2E-1566114IPR001005SANT/Myb domain
PfamPF002493.1E-1667110IPR001005SANT/Myb domain
CDDcd001676.14E-1069110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLTNFVL NNGIICWRKV PKLAGLLRCG KSCRLRWINY  60
LRPGLKRGSF TDSEEHQIIQ LHSRLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKQLG  120
LDSQKPFEIE KSQKNYGNKN NMNSDSSSSN NQEAISLESR PEDDHGMKIC PKKAEKPEEM  180
KATVDETNDP LNNYRMLCGS SDLDWLKESN NVSMGETACV EEEYWVDGVD SFLSWDSFVQ  240
VEDKFFPSWE IGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in chalaza of mature seeds, cotyledons, rosette leaves, cauline leaves, veins of stems, mature siliques, sepals and styles. Expressed at low levels in roots. {ECO:0000269|PubMed:23660402}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694274.10.0PREDICTED: myb-related protein 315-like
SwissprotQ9C7U75e-68MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A1U8K1310.0A0A1U8K131_GOSHI; myb-related protein 315-like
STRINGGorai.007G074500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-76myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]