 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_D11G0543 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
| Family | bHLH | ||||||||
| Protein Properties | Length: 210aa MW: 24124.2 Da PI: 11.1074 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 18.8 | 3e-06 | 48 | 94 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h+ +Er R+ri f+ Lr++l ++ K++Ka++L ++v+ +++L
Gh_D11G0543 48 QKHKTAERYQRKRISRQFDMLRTILLNL-----IKMDKASVLGETVRQVREL 94
68*************************9.....6************988877 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 11.808 | 45 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 5.31E-5 | 48 | 99 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 5.3E-9 | 49 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 7.2E-10 | 49 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.5E-4 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF55021 | 8.7E-5 | 131 | 198 | No hit | No description |
| Gene3D | G3DSA:3.30.70.260 | 1.9E-4 | 134 | 182 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 210 aa Download sequence Send to blast |
MVRLKQLEQD IQQHLRRYRA SISTIDFSFK SLKKVTKPKA EANIANAQKH KTAERYQRKR 60 ISRQFDMLRT ILLNLIKMDK ASVLGETVRQ VRELKNRVKE MKGASNGSLE CVLPGELNSL 120 SFGFSEKDGN LVKATFSCDD RPELIADLTR EIRKVNGTVV RAEMVFIGGR NKSVLWIKGF 180 SGNERMGMLK RALKMAIDIP KKNWNPRFNI |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012489249.1 | 1e-148 | PREDICTED: transcription factor bHLH131-like | ||||
| TrEMBL | A0A0D2S7N7 | 1e-147 | A0A0D2S7N7_GOSRA; Uncharacterized protein | ||||
| STRING | Gorai.007G059100.1 | 1e-148 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM13939 | 20 | 25 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38070.1 | 8e-30 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|