PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G2567
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 372aa    MW: 40897.4 Da    PI: 10.1016
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G2567genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.23.3e-1650133186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  v  L+ea+++++   +r+klk+++We+v++++      ++  ++++qCk+k+e+++kry+ + +++++      s++p++ +l+
  Gh_D10G2567  50 EWSEGAVSSLLEAYENKWVLRNRAKLKGHDWEDVARYVsaraNCTKSPKTQTQCKNKIESMKKRYRSESATAEG------SSWPLYPRLD 133
                  5*************************************844444455556679****************99997......4699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-1948133No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDKETNNQEN PSLLSNNNTN KEDCSPKKHP GSSTVTGGGG GSNDRLKRDE WSEGAVSSLL  60
EAYENKWVLR NRAKLKGHDW EDVARYVSAR ANCTKSPKTQ TQCKNKIESM KKRYRSESAT  120
AEGSSWPLYP RLDLLLRGNA AAAAAAAAPS PPPSLPLPPP PQQLHLSAVV QPQPPGPLFT  180
NLPLTLPEAS TLVVLQQQQQ PPPPPLPPAA PPPALAPQGL GTAQNSHGSN GFEKIPKDDG  240
AGTKVSDHLS DKVAIETDSS TPGLYSDKEK LRSKKLKMKT MENKKKKRRK KEEYREIGES  300
IRILAEVVLK SEESRMETLR EIEKMRIEAE TKRREMELKR TEIIANTQLE IAKLFAGSSN  360
KGIDPSLRIG RS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283288KKKKRR
2283290KKKKRRKK
3284288KKKRR
4284289KKKRRK
5284290KKKRRKK
6285289KKRRK
7285290KKRRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.102800.0boll| ovule| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9642361e-114JX964236.1 Gossypium hirsutum clone NBRI_TRANS-505 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016699750.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1U8KB820.0A0A1U8KB82_GOSHI; trihelix transcription factor ASIL2-like
STRINGGorai.011G216400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98592533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.14e-91sequence-specific DNA binding transcription factors