PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G2514
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 242aa    MW: 27681.6 Da    PI: 8.4252
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G2514genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.44.5e-43191482128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                  ppG+rF+P+d+e++++yL++k+ g +l+  + ikev +y+++P++L +       ++  +e+yfF++rd+kya+g+r+ r + +gyWkatg dk +++
  Gh_D10G2514  19 PPGYRFKPRDDEIINFYLRPKIFGLPLPP-NRIKEVFLYNYDPQTLTAmsnnaLSNGVGNEYYFFTPRDRKYANGSRPARNAGNGYWKATGADKLICR 115
                  9*************************999.77**************8434443222245699**********************************99 PP

          NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   kg+++glkk+Lvfy+g+ pkg+kt+W+mhey l
  Gh_D10G2514 116 -KGKKIGLKKSLVFYQGKPPKGVKTNWLMHEYVL 148
                  .9999***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-5316174IPR003441NAC domain
PROSITE profilePS5100550.76218175IPR003441NAC domain
PfamPF023652.7E-2319148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDPFMLMEEK DEACLRSIPP GYRFKPRDDE IINFYLRPKI FGLPLPPNRI KEVFLYNYDP  60
QTLTAMSNNA LSNGVGNEYY FFTPRDRKYA NGSRPARNAG NGYWKATGAD KLICRKGKKI  120
GLKKSLVFYQ GKPPKGVKTN WLMHEYVLTD APIRKRLGNE DMRLDDWVLC RVYKNPRVKK  180
LEHETLEDGN QEEADTATTV AYDGAQMVQQ EGHQVECEAE AARSAIPPYN GIQMVENGIA  240
FC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-5251744164NO APICAL MERISTEM PROTEIN
1ut4_B2e-5251744164NO APICAL MERISTEM PROTEIN
1ut7_A2e-5251744164NO APICAL MERISTEM PROTEIN
1ut7_B2e-5251744164NO APICAL MERISTEM PROTEIN
4dul_A2e-5251744164NAC domain-containing protein 19
4dul_B2e-5251744164NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472490.0KC847249.1 Gossypium hirsutum NAC domain protein NAC72 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022764266.12e-80NAC transcription factor 29-like
TrEMBLA0A2P5RIC61e-179A0A2P5RIC6_GOSBA; Uncharacterized protein
STRINGGorai.011G271500.11e-175(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17827310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-55NAC-like, activated by AP3/PI