PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G1019 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 27897.8 Da PI: 9.6403 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.3e-19 | 136 | 185 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f tae Aa a+++a++ ++g Gh_D10G1019 136 RYRGVRRRP-WGKWAAEIRDpF-----KaARVWLGTFHTAEAAAMAYDEAALGFRG 185 7********.**********66.....56**********************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-22 | 136 | 194 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-31 | 136 | 194 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-33 | 136 | 199 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.75 | 136 | 193 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-12 | 136 | 185 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-11 | 137 | 148 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.85E-13 | 144 | 195 | No hit | No description |
PRINTS | PR00367 | 4.7E-11 | 159 | 175 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MKREEGSWSS SSVRREREMR AVVSALTHVV AGEELVADNE NLDGFGSCIG DNDAASTWRR 60 SRQKRGREQL EEKEKEGSSS GSGSGSRGGN FRRRGGGYSC SAGVQDAGAE ANTRAQLAPT 120 YEYKSNEKYK EEAGRRYRGV RRRPWGKWAA EIRDPFKAAR VWLGTFHTAE AAAMAYDEAA 180 LGFRGNKAKL NFPENVKLRS PPSNLTTTLL PVFDSPNTLL SIPTILHSQC HDSLVQNPQV 240 SSTSIGSHAQ SCSSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 134 | 196 | 3 | 66 | ATERF1 |
3gcc_A | 3e-22 | 134 | 196 | 3 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 64 | RSRQKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016700553.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A1U8KHY8 | 0.0 | A0A1U8KHY8_GOSHI; ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A2P5S5T7 | 0.0 | A0A2P5S5T7_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G114900.1 | 1e-140 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24815 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 2e-22 | ERF family protein |