PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G0992 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 287aa MW: 31804.9 Da PI: 4.5234 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.1 | 3.4e-19 | 61 | 114 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ +++ +LA++lgL+ rqV vWFqNrRa++k Gh_D10G0992 61 KKRRLSVDQVKALEKNFEVENKLEPDRKSKLAQELGLQPRQVAVWFQNRRARWK 114 4558999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.9 | 4.3e-41 | 61 | 152 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls +qvk+LE++Fe e+kLep+rK++la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y++lk + ++L++e+e+L ++++e Gh_D10G0992 61 KKRRLSVDQVKALEKNFEVENKLEPDRKSKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKTSYESLKLNYNNLRHENEDLLKQISE 152 9**************************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.908 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-18 | 59 | 120 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.2E-18 | 60 | 125 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.7E-16 | 61 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.68E-17 | 61 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-20 | 63 | 123 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.6E-6 | 87 | 96 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 91 | 114 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.6E-6 | 96 | 112 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.4E-16 | 116 | 157 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MKRLGSSDSL SALMSICPTS DEHSPRNNNN VYSREFQSML EGFDEEGCFE ELTVGHGGGA 60 KKRRLSVDQV KALEKNFEVE NKLEPDRKSK LAQELGLQPR QVAVWFQNRR ARWKTKQLER 120 DYGVLKTSYE SLKLNYNNLR HENEDLLKQI SELKAKLIEP PPGSSLGTSS EPAEVNCESF 180 NDGGGNGSVG GGGDTFFPDL KDGSSDSDSS AILNEENNSG GDMEGGSPNN GAASSPSSMN 240 NCFQLFKTTY QTPQYVKMEE HDFISSTADE VCNFFSDEQA PSLQWWI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 116 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9687 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX964398 | 2e-56 | JX964398.1 Gossypium hirsutum clone NBRI_TRANS-667 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016698761.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
Swissprot | Q940J1 | 1e-71 | ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16 | ||||
TrEMBL | A0A2P5YCJ4 | 0.0 | A0A2P5YCJ4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G111500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 1e-66 | homeobox protein 16 |
Publications ? help Back to Top | |||
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