PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G0329

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 272aa MW: 29745.7 Da PI: 4.8805

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G0329	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.6	1.4e-29	76	134	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ +p++++itY+ eHnh Gh_D10G0329 76 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVNPTMLVITYSCEHNHA 134 69***********************998**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-30	70	136	IPR003657	WRKY domain
PROSITE profile	PS50811	30.963	70	136	IPR003657	WRKY domain
SuperFamily	SSF118290	4.32E-25	73	136	IPR003657	WRKY domain
SMART	SM00774	3.3E-34	75	135	IPR003657	WRKY domain
Pfam	PF03106	4.8E-25	77	133	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MDSGGSSSSS FRKVRNPFVT DQELEESDNV SSVTGAESPP PSTTKKGKRS MQKRVVSVPI 60 KDVEGSRLKG EGAPPSDSWA WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR KQVERSRVNP 120 TMLVITYSCE HNHAWPASRH NNTSAKQAAA AAGEASESPT KSTTAVKHDP STSQPDTEPD 180 SGMEDGFACL TEDSILTTGD EFAWFGEMET TSSTVLESPL FSERDNSEAD DTAMIFPMRE 240 EDESLFADLE ELPECSFVFR HQRNVGPQVG IC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-19	50	136	3	79	Disease resistance protein RRS1
5w3x_D	1e-19	50	136	3	79	Disease resistance protein RRS1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.25701	0.0	ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031107	0.0	KF031107.1 Gossypium hirsutum WRKY transcription factor 81 (WRKY81) mRNA, complete cds.
GenBank	KF669793	0.0	KF669793.1 Gossypium hirsutum WRKY transcription factor 91 (WRKY91) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647328.1	0.0	PREDICTED: probable WRKY transcription factor 65
Swissprot	Q9LP56	7e-80	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A0B0PC40	0.0	A0A0B0PC40_GOSAR; Putative WRKY transcription factor 65-like protein
STRING	Gorai.011G037500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5383	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	8e-81	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]