PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0199
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 472aa    MW: 52544.4 Da    PI: 10.3709
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0199genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.7e-08841236
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                     grW t+E++ll  av ++G ++W+++a+++  +R+
      Gh_D10G0199  8 GRWGTWEELLLGGAVLRHGARDWNLVASELR-TRS 41
                     9******************************.998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.600.001459IPR009057Homeodomain-like
PfamPF002491.9E-6742IPR001005SANT/Myb domain
CDDcd001670.0012956No hitNo description
SuperFamilySSF473705.49E-18259370IPR001487Bromodomain
SMARTSM002972.9E-18262370IPR001487Bromodomain
Gene3DG3DSA:1.20.920.108.6E-16270371IPR001487Bromodomain
PfamPF004391.3E-13276354IPR001487Bromodomain
PROSITE profilePS5001410.415281351IPR001487Bromodomain
CDDcd043699.63E-16283361No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MGTDMVTGRW GTWEELLLGG AVLRHGARDW NLVASELRTR SISPFDFTPE VCKAKYEDLQ  60
QRYSGSTAWF EELRKQRMEE LRRALEKSED SIGSLESKLE SLKAEKRDDS RVGYDSSQTE  120
SVLPCVKSEG VEFSSKDTYK DGLSAGSFTQ EAETKWAPDC LVPVAVPAEE MDSKLGNSPT  180
SAEREKISTI DNLADALLGG QLRSIRKRRG KRKRKYCSPK EGSVGESEFL GTSDFASVSW  240
CKETSASNSA QIARSSGVED QSRDSSKDRI DEIVGIFSSV AENDCASIFR RRLDSQKRGR  300
YKKMILRHMD FDTIKSRIGS NSINSVRELF RDMLLVANNA LVFYSKNTRE YKSALLLRHI  360
VTASLRQHLK ECRTKIPITT FTPTRPIHKP PAKPRSIRPG NRKPPGNAAN NRNPVVGNSN  420
VSKKPTNASS PPSMESLVVI KKGSARPRKG GCAQASQKSE SPAKGRKRTR AQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1464470GRKRTRA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016726215.10.0PREDICTED: uncharacterized protein LOC107937764 isoform X2
TrEMBLA0A1U8MHE30.0A0A1U8MHE3_GOSHI; uncharacterized protein LOC107937764 isoform X2
STRINGGorai.011G024300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7607915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.18e-34DNA-binding bromodomain-containing protein