PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0179
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 213aa    MW: 24310.9 Da    PI: 5.7535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0179genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-102376655
                 HHHHHHHHHHHHHHHHHHHCTSCC.C......TTS-STCHHHHHHHHHHHHHHH CS
          HLH  6 nerErrRRdriNsafeeLrellPk.as...kapskKlsKaeiLekAveYIksLq 55
                  ++ErrRR+++ +++ +Lr+l+P       + +   ++Ka+i   A+ YI++Lq
  Gh_D10G0179 23 LQAERRRRQKLSDRLLTLRSLVPIiTNaitQHTFLYMNKATIIDDAITYIQELQ 76
                 579********************96658654444559****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.18E-141490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.08E-101580No hitNo description
PROSITE profilePS5088813.9291775IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-131793IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-82276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-82381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRRKLEDDD DNNNSKEFKS KNLQAERRRR QKLSDRLLTL RSLVPIITNA ITQHTFLYMN  60
KATIIDDAIT YIQELQKTSQ VLSEQLLEME GSSEESVMPM KLEIDVAQHD MKKCGIKEEV  120
KVSNIDGNKF LIKIIVEKKR GCFTQLVEAM NYLGFELSET NVTTFSGAML FSSCVHGKYG  180
DTLMVEHIEE LLSEMMRSMK TSSQSAIELG NTN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456992.11e-143PREDICTED: transcription factor DYT1
TrEMBLA0A0D2VH361e-143A0A0D2VH36_GOSRA; Uncharacterized protein
STRINGGorai.011G019900.11e-143(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83582538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.19e-43bHLH family protein