PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D10G0061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 293aa MW: 31842.5 Da PI: 8.1371 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.7 | 3.8e-31 | 219 | 277 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Gh_D10G0061 219 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 277 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-31 | 212 | 279 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.109 | 213 | 279 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-26 | 216 | 279 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 218 | 278 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-26 | 220 | 277 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MFFGLEMENY QGDLNDIVRA SAEPAHFSDM VPQLSSWQQE FPSSDPLSFS SSAMEDDYST 60 NTFGDPFSAI RDPLLLLQEL NVVGTGSSST YFNNSPNSTN DHHHMGGFDD MTSPCNIFSR 120 IQISHSSNPL PPCDPPRMAA ASTGLGGHKA PAVFPSDMVN AKSCLIDNTA AAASVPVQIS 180 SPRNLGIKRR LGKSQGKKVV CIPAPAAANS RSSGEVVPSD LWAWRKYGQK PIKGSPYPRG 240 YYRCSSSKGC SARKQVERSR TDPNMLVITY TSEHNHPWPT QRNALAGSTR SQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-26 | 193 | 280 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 4e-26 | 193 | 280 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM438458 | 1e-114 | KM438458.1 Gossypium aridum WRKY27 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012454645.1 | 0.0 | PREDICTED: probable WRKY transcription factor 14 isoform X1 | ||||
Swissprot | Q9SA80 | 1e-87 | WRK14_ARATH; Probable WRKY transcription factor 14 | ||||
TrEMBL | A0A0D2VGJ0 | 0.0 | A0A0D2VGJ0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G006600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3085 | 28 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30650.1 | 2e-88 | WRKY DNA-binding protein 14 |
Publications ? help Back to Top | |||
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