PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D09G1953 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 291aa MW: 32323.2 Da PI: 7.8189 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.6e-19 | 142 | 191 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+tae Aa a++ a+ l+ge Gh_D09G1953 142 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEAAAMAYDTAAYILRGE 191 8******9.**********955...5************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.48E-22 | 140 | 200 | No hit | No description |
SuperFamily | SSF54171 | 2.35E-22 | 141 | 199 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-35 | 141 | 204 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.655 | 141 | 198 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-31 | 141 | 199 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 142 | 153 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-12 | 142 | 191 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 164 | 180 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MATTGSTFFN NPIIWASSSS EETPGSNLLK NVPGFINQDI NHGFNPINQA QPSPSMATTM 60 SQFPDLTSLF GPSKRVIDPI NENPPLQTPQ QWLRINQSFT NDQSKGFSDY WLSTTKTHPM 120 KYSGRRFQNQ HQKGYSSPGK LFRGVRQRHW GKWVAEIRLP RNRTRVWLGT FDTAEAAAMA 180 YDTAAYILRG EYAQLNFPDL KDQVMANSLN GNTAAILEAK LQAISQGSTV NKKSDLDTTT 240 TMPAEEGVSG LNRNTTKNME ALSSDVDGVQ LSRLPSLDMD IIWDALLVSD S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-20 | 137 | 198 | 1 | 63 | ATERF1 |
3gcc_A | 8e-20 | 137 | 198 | 1 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614788 | 1e-94 | JX614788.1 Gossypium hirsutum clone NBRI_GE58430 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016670429.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF062-like | ||||
Swissprot | Q9SVQ0 | 6e-68 | ERF62_ARATH; Ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | A0A1U8I3Z5 | 0.0 | A0A1U8I3Z5_GOSHI; ethylene-responsive transcription factor ERF062-like | ||||
STRING | Gorai.006G222600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10799 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 5e-58 | ERF family protein |