PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D09G1640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 175aa MW: 19772 Da PI: 8.3973 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 87.5 | 1.3e-27 | 9 | 58 | 5 | 57 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 Y+eCl+NhAaslG++a+DGCgEf+ + +++ ++l+CaACgCHRnFHR+ + Gh_D09G1640 9 LYRECLRNHAASLGSYATDGCGEFTLD---HTSLSTLQCAACGCHRNFHRKVS 58 6*************************8...6689****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 9.3E-24 | 9 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.4E-23 | 10 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.849 | 10 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-18 | 10 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 92 | 159 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.94E-15 | 92 | 157 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.0E-29 | 99 | 157 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MEKEYPSDLY RECLRNHAAS LGSYATDGCG EFTLDHTSLS TLQCAACGCH RNFHRKVSYC 60 NSNSRSRGDP VERVDYGDDG GRPPVLLEYS TEAGARSGKK RFRTKFTAEQ KEKMLEFAEK 120 LGWRLQRRDE EDQVDKFCRG IGVSRQVFKV WMHNHKNTST ASSVSTCNAS SLTTP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-22 | 100 | 162 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016670942.1 | 1e-130 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9SB61 | 8e-40 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A1U8HY53 | 1e-129 | A0A1U8HY53_GOSHI; zinc-finger homeodomain protein 9-like | ||||
TrEMBL | A0A2P5QZ19 | 1e-129 | A0A2P5QZ19_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G190600.1 | 1e-128 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18527 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-42 | homeobox protein 22 |
Publications ? help Back to Top | |||
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