PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1459
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 623aa    MW: 69408.4 Da    PI: 10.3656
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1459genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.5e-08529578147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
      Gh_D09G1459 529 RRPFSVSEVEALVQAVEKLGTGRWRDVKLHAFdnaKHRTYVDLKDKWKTL 578
                      678999************************999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.93E-5343414IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.903524583IPR017930Myb domain
SMARTSM007174.5E-8528581IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-10529579IPR009057Homeodomain-like
SuperFamilySSF466894.4E-16530611IPR009057Homeodomain-like
CDDcd116607.58E-17530580No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MVSQTRLEYG FIGYQVPVFP RASRSARVRV PNRKNSGNNE KHAFEILVSV AGDFLQEGET  60
FVPPNCKKDQ QNACKNLVLK EQEDESQSSK CNLSDKETYN EKTLSGYHQI RTVNKFSHAP  120
DRFNLKPYSS LKGFDKLANV SGRKANHSSE VGISSLISGE FSEGQFEDAG AELSIIQTVK  180
SGTLQPTGSL DALEMDCKPP HYFCSGSKTS LFKDWTTLGP SRHSDTIETV SRDDNGNYVA  240
DQRIKNLSSS RRWRVSPNLN GGASFKNDGK RRKIFHDGRT SYSRQRSKRI SPLKRRDFFN  300
QCPFSGSDRG FQLDDRFNSA ADKRGDAIRV ASSVTSPHPH PGSRDRNVKL RIKSFKVPEL  360
LVEIPTTATV GSLKRSVMEA VTTVLGDGLH VGILLQGKKV RDDSKTLLQT GISRDGKHCN  420
LGFMLEPRHA QIKLPWCLGE QGITSHATSF TLDPRTSSIS LDPPVAGCIN GAQRDHHLVP  480
SLPNISASTT PLPNSQSVVS VPAISVEALA VVPIHHRAGR REFVQRRIRR PFSVSEVEAL  540
VQAVEKLGTG RWRDVKLHAF DNAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD  600
RVLAVHAYWS QQQAKQQQLK PGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A9e-545136161104Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283288RQRSKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016671199.10.0PREDICTED: telomere repeat-binding protein 6-like isoform X2
TrEMBLA0A1U8I6420.0A0A1U8I642_GOSHI; telomere repeat-binding protein 6-like isoform X2
STRINGGorai.006G172000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2218045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-106TRF-like 2