PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D09G1358 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 280aa MW: 30580.6 Da PI: 8.1661 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00038 | 189 | 211 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg Fs+ L H+r+H Gh_D09G1358 189 HECSMCGAEFSSGQALGGHMRRH 211 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.4E-10 | 114 | 139 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.05E-7 | 115 | 137 | No hit | No description |
PROSITE profile | PS50157 | 9.182 | 115 | 142 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.45 | 115 | 137 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.05E-7 | 184 | 211 | No hit | No description |
Pfam | PF13912 | 5.1E-12 | 188 | 212 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 189 | 211 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.847 | 189 | 211 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 191 | 211 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 280 aa Download sequence Send to blast |
MDSQEEVAAC KDQLQIIKGK RSKRPRQLSP LSLAMGSSPT TTATTSSGAE SGRNSDDWRG 60 FGSPTTSVEL AESTEEDEDM ANCLILLARG QTGKLAPEPV SIATTSKTMT GTYVHQCKTC 120 NRCFPSFQAL GGHRASHKKP KVANIEENNK GLMFMKEDVQ QPFSDMNTTL SLQITNKPAL 180 CHISKPKVHE CSMCGAEFSS GQALGGHMRR HRTIPNAAAA TTIVRPESDD KPKKPRTVLQ 240 LDLNLPAPED DHQRETKFSF ASKQDKLVLF SASSLVDCHY |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 231 | 237 | PKKPRTV |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.23546 | 0.0 | boll| ovule |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016691493.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A1U8JRV5 | 0.0 | A0A1U8JRV5_GOSHI; zinc finger protein ZAT5-like | ||||
STRING | Gorai.006G161200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6347 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03510.1 | 2e-56 | C2H2 family protein |