PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1201
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 685aa    MW: 75413.5 Da    PI: 9.5403
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1201genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.6e-091044136
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36
                     ++ W t+ ++ll++av+++G+++W+++a +++ +Rt
      Gh_D09G1201 10 KQTWGTWKELLLACAVHRHGSNSWDSVAMELQ-KRT 44
                     689*****************************.999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.7E-4967IPR001005SANT/Myb domain
PfamPF002491.0E-71045IPR001005SANT/Myb domain
CDDcd001671.14E-41265No hitNo description
Gene3DG3DSA:1.20.920.101.8E-13290419IPR001487Bromodomain
SMARTSM002973.8E-14299408IPR001487Bromodomain
SuperFamilySSF473701.57E-15301407IPR001487Bromodomain
CDDcd043697.97E-13310403No hitNo description
PfamPF004391.4E-9314392IPR001487Bromodomain
PROSITE profilePS5001413.589318389IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MAKPHNFPEK QTWGTWKELL LACAVHRHGS NSWDSVAMEL QKRTSTFQHL FFTPLSCQQK  60
FQDLKRRFAE NGDDDETTNN ISTSAVPWLD ELRKLRVAEL RREVQQYDLS IVSLQLKVQK  120
LKEEREQSLT ENGKETEKSD LEREKGSEKK EENETENITR RPVNSREESE RENHSVNESN  180
STDPKEEDPG TGPDEAKDEP EPVEPDGGET GKEVQSVKPE GEASCNGSCD SVAKGSAENS  240
KLVDPRETGD SPESVAESKG EEPNRESSDV QSSASLSGKE KKNAEPGEPD NGELDQSPSI  300
KKVSVESQPL VEFLEIFQSH KLGSLFERRL ESQKTPDYSN LIRQHLDLET IGLRVEEGWY  360
AGCKSKFFRD LLLLLTNAII FFGKESSEYA AAIEFRQLVS KEIDAQFRNS SVLPKEQSPS  420
RVLESQMPLK PEPQLSLSLS MKPKLSVPLI ACRKRSSIAA KSSTSSSGQE KKRQLLASLM  480
NEKPALGWKQ HDKSIEESPV AKKRTRESSA SGLRKASKNA KARSNTNTNK NSGTNANAAI  540
SSKGGSSNDN SESKGGEKEK SNSKTASSKK PSAANFLNRM RSSLSGNEPL TETLKGVISS  600
DKGKGGGDAG EHKKNSTSSK GDQQKDRTPT PRTRSGGKRT SPAKRSTGRP PKRVPATQSA  660
PPGKRGREAV ENHSGGGQAK KRSRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.11040.0boll| ovule| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5802545e-90JX580254.1 Gossypium hirsutum clone NBRI_GE12650 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016671479.10.0PREDICTED: muscle M-line assembly protein unc-89-like
TrEMBLA0A1U8I6X20.0A0A1U8I6X2_GOSHI; muscle M-line assembly protein unc-89-like
STRINGGorai.006G142400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-97DNA-binding bromodomain-containing protein