PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1200
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 686aa    MW: 75558.7 Da    PI: 9.8446
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1200genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13.2e-111044136
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36
                     ++ W t+E++ll++av+++G+++W+++a +++ +Rt
      Gh_D09G1200 10 KQTWGTWEELLLACAVHRYGNNSWDSVAMELQ-KRT 44
                     789*****************************.999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.9E-7967IPR001005SANT/Myb domain
SuperFamilySSF466893.67E-5966IPR009057Homeodomain-like
PfamPF002493.7E-101045IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-41045IPR009057Homeodomain-like
CDDcd001671.60E-61265No hitNo description
SMARTSM002974.9E-15300409IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.6E-12305406IPR001487Bromodomain
SuperFamilySSF473707.33E-16306411IPR001487Bromodomain
PfamPF004392.7E-9314393IPR001487Bromodomain
CDDcd043692.62E-13314404No hitNo description
PROSITE profilePS5001413.285319390IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MAKHHSFPEK QTWGTWEELL LACAVHRYGN NSWDSVAMEL QKRTSTFQHL FFTPLSCQQK  60
FQDLKRRFAE NGDDGETTNN NISTSTVPWL DELRRLRVAE LRREVQQYDL SIVSLQMKVQ  120
KLKEEREQSL TENGKETEKS DLEREKGSEK KEDNETENIT RRPVNSREES ERENHSVNES  180
NSTDPKEESP GTGPDEAKVE PEPVEPDGGE TGKEVQSVKP GGEASCNGSC DSVAKGSAEN  240
SERVDPRETG DSPESVAESK GEEPNRESSD VQSSASLSGK EKKNAEPDEP DNGELDQSLS  300
IKKVSVESQP LVALLDIFRS HKLGSLFERR LEIQKTPDYS NLIRQHLDLE TIGMRVEEGW  360
YSGCKSKFFR DLLLLLTNAI IFFGKESSEH AAAIEFRQLV SKEIRTQFRN SSVLPKEQSS  420
SRVPESQMPL KPEPQLSLSL SMKPKLSVPL IACRKRSSIA AKSSTSSSGQ EKKRQLLASL  480
MNEKPALGWK QHDKSIEESP VAKKRTRESS ASGSRKASKN AKARSNTNTN KNPGTNTNAA  540
ISSKGGSSND NSESKGGEKE KSNSKTASSK KPSAANFLNR MRSSLSGNEP LTETLKGVIS  600
SDKGKGGGDA GEHKKSSASS KGDQQKDRTP TPRTRSGGKR TSPAKRSTGR PPKRVPATQS  660
APPGKRGREA VENHSGGGQA KKRSRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.11040.0boll| ovule| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5802541e-99JX580254.1 Gossypium hirsutum clone NBRI_GE12650 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485627.10.0PREDICTED: myb-like protein X
TrEMBLA0A0D2NSQ10.0A0A0D2NSQ1_GOSRA; Uncharacterized protein
STRINGGorai.006G142300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.14e-87DNA-binding bromodomain-containing protein