PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0967
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 717aa    MW: 78564.5 Da    PI: 7.5837
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0967genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.91.6e-084144511954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt  qV++WF N R +
  Gh_D09G0967 414 FEHflHPYPKDSDKHILAKQTGLTRGQVSNWFINARVR 451
                  554459******************************88 PP
2BELL124.34.8e-40278349172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +rqelq+kkakL+s+l+eV++rY+qy++q+++v+ssFe++aglg+ak+Yt+lAlk+iS++FrcLkdai++qi
  Gh_D09G0967 278 QRQELQMKKAKLVSMLDEVEQRYRQYHHQMHIVVSSFEQAAGLGAAKSYTALALKTISKQFRCLKDAISGQI 349
                  69*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-64207347IPR006563POX domain
PfamPF075262.6E-50212346IPR006563POX domain
PROSITE profilePS5007111.677392455IPR001356Homeobox domain
SMARTSM003896.6E-8395459IPR001356Homeobox domain
CDDcd000867.11E-11395456No hitNo description
SuperFamilySSF466893.68E-16396461IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-27398461IPR009057Homeodomain-like
PfamPF059207.4E-17412451IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MATYFHGSSD FQAASADGLQ TLYLMNPNYV PYADTHQQPS AATNMFFLNP TSLPQAPPPN  60
HHQRFLGLPL PTPSTSIKPL NSDDPHRPSP LQGVVPGFHS NLWGSSVDHQ NSPGSSHPQV  120
VSAAATGDNS GGSHDVASQS GFQRPVVSPR QGLSLSLSSQ QVGYRSSNNV ETDIQGQPQV  180
PTMSLGEDVR ISGNSPSSVS VVSNGIYGAQ SVVLGSKYLR AAQELLDEVV NVGKGIKTDV  240
SEGTKEEKIK VNKESVAGEG SSAGENGAKR GAELTTAQRQ ELQMKKAKLV SMLDEVEQRY  300
RQYHHQMHIV VSSFEQAAGL GAAKSYTALA LKTISKQFRC LKDAISGQIK ATSKSLGEED  360
CLGAKVDGSR LRYVDHQLRQ QRALQQLGMI QHNAWRPQRG LPERAVSVLR AWLFEHFLHP  420
YPKDSDKHIL AKQTGLTRGQ VSNWFINARV RLWKPMVEEM YLEEVKEQER NGSEVKANKS  480
VQKESESSSS AHQENVSFMM NQVKAQSQPE KSINQQQNMP PTEFSNSTMG GSFLPQTATA  540
FNLIGSCDLD GAAQRSPKKP RSSVNELQNS PSSILSMDTE MKQGETREIN MNFGDERMPK  600
DSYSFFTGTD NTGSGFPTYS AMGDIGRFDP NQLTQRFHGN SVSLTLGLPH CENLSLSGNH  660
QSLLSNQNIQ LGRRLELGQS EVDFCGINNT QQASHSSTFE MQNRKRFAAQ LLPDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16401459563Homeobox protein Meis2
3k2a_B5e-16401459563Homeobox protein Meis2
4xrm_A6e-16401459563Homeobox protein Meis2
4xrm_B6e-16401459563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.126140.0boll| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6152608e-98JX615260.1 Gossypium hirsutum clone NBRI_GE59161 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016680893.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLA0A1U8IWZ20.0A0A1U8IWZ2_GOSHI; BEL1-like homeodomain protein 1
STRINGGorai.006G115600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16274513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-123BEL1-like homeodomain 1