PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D09G0648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 289aa MW: 32943.7 Da PI: 7.6842 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l++++ +G+g+W++ a+ g++Rt+k+c++rw++yl Gh_D09G0648 23 RGPWTIEEDFKLINYISIHGKGRWNSLAHSAGLKRTGKSCRLRWLNYL 70 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++ Gh_D09G0648 76 RGNITLEEQLLILQLHSRWGNR-WSKIAQFLP-GRTDNEIKNYWRT 119 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.049 | 18 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.35E-31 | 20 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-14 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-16 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-22 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.39E-11 | 25 | 70 | No hit | No description |
SMART | SM00717 | 5.9E-14 | 75 | 123 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.904 | 75 | 125 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.7E-14 | 76 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.39E-7 | 96 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MDVKARSSSG PNMVSTEEED LKRGPWTIEE DFKLINYISI HGKGRWNSLA HSAGLKRTGK 60 SCRLRWLNYL RPDVRRGNIT LEEQLLILQL HSRWGNRWSK IAQFLPGRTD NEIKNYWRTR 120 VQKHAKQLKC DVNSKKFKDT MRYLWMPRLV ERIQAATTTT NTASTSAATT SNASIEQMML 180 PNLSYYTPDN ASTTASSDSI GTQVSPISDS IDYYNGVSTN YNPNQDYLQA NHESLISPIG 240 SYCNNGDGMD FGLMELNHHW ASDGDGDGSH NLLNAEDFFF LQHQFNFNM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-27 | 20 | 117 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012484599.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9FGY3 | 2e-88 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A0D2NNI9 | 0.0 | A0A0D2NNI9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G080800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 1e-82 | myb domain protein 78 |
Publications ? help Back to Top | |||
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