PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0484
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 269aa    MW: 30489.2 Da    PI: 8.0991
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0484genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.22.9e-08155202455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR +iN+++  L++++P +    ++ +  a +L + ++Y++sLq
  Gh_D09G0484 155 SHSLAERVRRGKINERLRCLQDIVPGC----HRTMGMAVMLDEIINYVQSLQ 202
                  8*************************9....889999*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-16149219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.42E-8149206No hitNo description
Gene3DG3DSA:4.10.280.101.2E-15151213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.996151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-5155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-8157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MADFTSDFQS FKQSFSFLDM ESLNHFTELN PRLLDNSVMN YQSFLPSSID NFFSNQAQAI  60
PGHEGGNLQS TASVFQPLLS AKTELIHESM KRKALDVSKS SSFGNSLSSP QVSEAEVKRR  120
NDSGRGKRAK RNEKEEEKPK DVVHVRARRG QATDSHSLAE RVRRGKINER LRCLQDIVPG  180
CHRTMGMAVM LDEIINYVQS LQNQIEFLSM KLTAASTYYD FNSEPDALER MQREKAQEAK  240
ELERLMKERY VGGLACFHSS SSSTWSSLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117130KRRNDSGRGKRAKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.231150.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484285.10.0PREDICTED: transcription factor BEE 1-like
RefseqXP_016673479.10.0PREDICTED: transcription factor BEE 1-like
SwissprotQ8GWK72e-64BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A0D2NMG70.0A0A0D2NMG7_GOSRA; Uncharacterized protein
TrEMBLA0A1U8ICG70.0A0A1U8ICG7_GOSHI; transcription factor BEE 1-like
STRINGGorai.006G060400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.13e-60BR enhanced expression 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]