PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0462
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 295aa    MW: 32320.2 Da    PI: 7.5515
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0462genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.1e-10653345
                     SS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45
                     +W+ eE++ + +a++++  +      +W++Ia+t++ +++l+++k+++ 
      Gh_D09G0462  6 SWSREEEKAFENAIAMHWIDkeeceeQWEKIASTVP-TKSLEELKLHYE 53
                     7*****************99****************.**********96 PP
2Myb_DNA-binding391.9e-12133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
      Gh_D09G0462 133 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 177
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.139260IPR017884SANT domain
SMARTSM007170.0013358IPR001005SANT/Myb domain
SuperFamilySSF466894.09E-8662IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-4653IPR009057Homeodomain-like
CDDcd001678.95E-7656No hitNo description
PfamPF002496.7E-6653IPR001005SANT/Myb domain
PROSITE profilePS5129417.282125182IPR017930Myb domain
SuperFamilySSF466897.18E-17128183IPR009057Homeodomain-like
SMARTSM007172.3E-10130180IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.1E-17130180IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.3E-11131176IPR009057Homeodomain-like
CDDcd001679.64E-10133178No hitNo description
PfamPF002497.2E-11133177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAGSVSWSRE EEKAFENAIA MHWIDKEECE EQWEKIASTV PTKSLEELKL HYELLVEDVT  60
AIEAGHVPLP CYKGEEPSSS AKDYFHGPSM APNSDRRSNS GYGNGFSGLT LDSTGHGGKQ  120
SSRSDQERRK GIPWTEEEHR LFLLGLDKFG KGDWRSISRN FVISRTPTQV ASHAQKYFIR  180
LNSMNRDRRR SSIHDITSVN NGDTSHQAPI TGQQANTNSP GAAVMGQSVK HRAQPHLPGL  240
GMYGAPVGRP IAAAPGHIGS AVGTPVMLPP AHHPHSPPPY IVPVAYPMAP PPMHQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aboveground tissues, with the highest level in leaves. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484322.10.0PREDICTED: transcription factor DIVARICATA
SwissprotB8A9B22e-83MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH592e-83MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A0D2RXZ80.0A0A0D2RXZ8_GOSRA; Uncharacterized protein
TrEMBLA0A2P5SR650.0A0A2P5SR65_GOSBA; Uncharacterized protein
STRINGGorai.006G063000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103042535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.18e-81MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]